HsaEX6079156 @ hg38
Exon Skipping
Gene
ENSG00000101203 | COL20A1
Description
collagen type XX alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr20:63325441-63326149:+
Coord C1 exon
chr20:63325441-63325494
Coord A exon
chr20:63325668-63325721
Coord C2 exon
chr20:63326096-63326149
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCCCCTCTGTTCTCTCCCAGGGC
3' ss Score
11.45
5' ss Seq
AAGGTGCCG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GGTCCACCAGGGGTCAAAGGAGAGAAGGGAGACCATGGGCTTCCAGGCTTGCAG
Seq A exon
GGCCACCCCGGCCACCAGGGCATCCCCGGGAGAGTTGGCCTCCAGGGACCAAAG
Seq C2 exon
GGAATGAGAGGCCTGGAGGGAACTGCTGGCCTGCCTGGACCCCCTGGCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101203-'32-46,'32-45,33-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.8=100),PF0139113=Collagen=PU(21.6=61.1)
A:
PF0139113=Collagen=PD(18.6=61.1),PF0139113=Collagen=PU(18.0=61.1)
C2:
PF0139113=Collagen=PD(23.7=77.8),PF0139113=Collagen=PU(28.8=94.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCACCAGGGGTCAAAGG
R:
CCAGGCAGGCCAGCAGTT
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains