RnoEX0023012 @ rn6
Exon Skipping
Gene
ENSRNOG00000010326 | Col20a1
Description
collagen type XX alpha 1 chain [Source:RGD Symbol;Acc:1563901]
Coordinates
chr3:176521600-176522274:+
Coord C1 exon
chr3:176521600-176521653
Coord A exon
chr3:176521752-176521805
Coord C2 exon
chr3:176522221-176522274
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTATCTCTGTTCCCTCACAGGGC
3' ss Score
11.12
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GGGCCACCAGGAGCCAAAGGAGAGAAGGGGGATCACGGCCTCCCGGGCTTGCAG
Seq A exon
GGCCTCTCTGGCCAGCAAGGCATCCCTGGGAAAACTGGCCTACAAGGACCAAAG
Seq C2 exon
GGAATGAGAGGACTGGAGGGACCTGCTGGGCTGCCTGGACCACCTGGCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010326-'34-46,'34-45,35-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(30.9=100)
A:
PF0139113=Collagen=FE(30.9=100)
C2:
PF0139113=Collagen=PD(20.0=61.1),PF0139113=Collagen=PU(28.8=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACCAGGAGCCAAAG
R:
CCAGGTGGTCCAGGCAGC
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]