BtaEX6065472 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004582 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr13:54736338-54736891:-
Coord C1 exon
chr13:54736838-54736891
Coord A exon
chr13:54736679-54736732
Coord C2 exon
chr13:54736338-54736391
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCACCTCTGTTCTATTTCAGGGC
3' ss Score
12.18
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGTCCGCCAGGGGTCAAAGGAGAGAAGGGGGACCACGGACACCCCGGCTTGCAG
Seq A exon
GGCCACCCCGGCCTCCAGGGCACCCCCGGGAAGATTGGCATCCAGGGACCGAAG
Seq C2 exon
GGAATGAGAGGCCTGGAGGGGACTGCTGGACTGCCTGGCCCCCCAGGCCCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004582-'38-39,'38-38,39-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(30.9=100)
A:
PF0139113=Collagen=FE(30.9=100)
C2:
PF0139113=Collagen=PD(20.0=61.1),PF0139113=Collagen=PU(28.8=94.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCGCCAGGGGTCAAAG
R:
CCAGGCAGTCCAGCAGTCC
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]