HsaEX6079165 @ hg19
Exon Skipping
Gene
ENSG00000101203 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:14670]
Coordinates
chr20:61946756-61950552:+
Coord C1 exon
chr20:61946756-61946791
Coord A exon
chr20:61947905-61948043
Coord C2 exon
chr20:61950410-61950552
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCCCCCACCATCTTCCCCAGGGT
3' ss Score
7.98
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CCTGCCCAGCCCTCCGCCCTGACGGCTCCCTCCCAG
Seq A exon
GGTTTGACCTGATGGTGGCCTTCAGCCTGGTGGAAAAGGCTTATGCGTCCATCCGGGGCGTGGCCATGGAGCCCTCTGCCTTCGGTGGGACCCCGACCTTCACGCTCTTCAAGGACGCCCAGCTGACAAGACGGGTCAG
Seq C2 exon
TGACGTCTACCCAGCCCCCCTACCTCCAGAGCACACCATCGTCTTCCTTGTGCGCCTACTTCCCGAGACACCCCGTGAGGCCTTCGCGCTGTGGCAGATGACAGCCGAGGACTTCCAGCCCCTCCTTGGGGTTCTGCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101203-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGGCTCCCTCCCAG
R:
ATCCAGCAGAACCCCAAGGAG
Band lengths:
160-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)