RnoEX6020709 @ rn6
Exon Skipping
Gene
ENSRNOG00000010326 | Col20a1
Description
collagen type XX alpha 1 chain [Source:RGD Symbol;Acc:1563901]
Coordinates
chr3:176510016-176514644:+
Coord C1 exon
chr3:176510016-176510054
Coord A exon
chr3:176511236-176511374
Coord C2 exon
chr3:176514502-176514644
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACCATTCTCTGTTCCACCAGGGT
3' ss Score
9.78
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CAGCCTGCCCAGCCCTGCACCCGGACAGTTCCCTCTCAG
Seq A exon
GGTATGACCTGATGATGGCCTTTGGCCTTGTGGCAAAGGAGTATGCCTCTATTCGAGGGGTGGCTATGGAGCCCTCAGCCTTCGGTGTGGCCCCAACCTTCACTCTCTTCAAGGATGCTCAACTGATGCGGCGGGTCAG
Seq C2 exon
TGACGTCCACCCAGCAACCCTGCCACCAGAACACACCATTGTCTTCCTTGTGCGTCTACTTCCTGAAACACCCCGGGAAGCCTTTGCACTGTGGCAGATGATGGCTGAAGACTTCCAGCCTATCCTCGGGGTTCTTCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010326-'24-33,'24-31,25-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCACCCGGACAGTTC
R:
CATCCAGAAGAACCCCGAGGA
Band lengths:
170-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]