GgaEX1016498 @ galGal4
Exon Skipping
Gene
ENSGALG00000005797 | COL20A1
Description
collagen alpha-1(XX) chain precursor [Source:RefSeq peptide;Acc:NP_001004392]
Coordinates
chr20:9195742-9199537:+
Coord C1 exon
chr20:9195742-9195780
Coord A exon
chr20:9197403-9197541
Coord C2 exon
chr20:9199395-9199537
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTTCTTTGTTCCAGGAT
3' ss Score
11.87
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
CCTGTCCCCCCATCAGCTCTTCTGCAGGCTCCGTACGAG
Seq A exon
GATTTGATATGATGGAAGCGTTTGGCTTAGTAGAGAAGGAATACGCCTCCATTAAAGGAGTGGCTATGGAGCCATTCATATTCAGTGGCTCCCGCACCTTCACCCTGTTCAGAGACATTCAGCTCACCCTGAGGACCAG
Seq C2 exon
CGACGTCCACCTCTTTGCCATCCCACCCGAGCACACCATCAGCATCCTCCTGCGCCTCCTACCTGACACCCCCAAGGAGCCCTTCGCTGTGTGGCAAATAACCGACGAGGACTTCCAGCCCCTCCTTGGTGTTAACCTTGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005797-'28-34,'28-33,29-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATCAGCTCTTCTGCAG
R:
ACCAAGGAGGGGCTGGAAG
Band lengths:
162-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]