MmuEX6107617 @ mm10
Exon Skipping
Gene
ENSMUSG00000016356 | Col20a1
Description
collagen, type XX, alpha 1 [Source:MGI Symbol;Acc:MGI:1920618]
Coordinates
chr2:181006705-181007725:+
Coord C1 exon
chr2:181006705-181006847
Coord A exon
chr2:181007126-181007235
Coord C2 exon
chr2:181007567-181007725
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCTGTATCCTCCCCGCCAGCTG
3' ss Score
7.73
5' ss Seq
AAGGTCCTG
5' ss Score
-0.19
Exon sequences
Seq C1 exon
TGACATCTACCCAGCAACCCTGCCACCAGAACACACCATTGTCTTCCTTGTGCGTCTACTCCCTGAGACACCCCGGGAAGCCTTTGCACTGTGGCAGATGATGGCTGAAGATTTCCAGCCCATCCTCGGGGTTCTGCTGGATG
Seq A exon
CTGGCAGAAAGTCTCTGACTTACTTCAACCATGATTCCCGGGCAGCCTTGCAGGAGGTCACCTTTGACCTGCAGGATGCAAAGAAGATCTTCTTTGGAAGCTTCCACAAG
Seq C2 exon
GTACATATAGCTGTAGGCCACTCTAAGGTCAGACTCTATGTGGACTGTCGGAAGGTGGCCGAGCGTCCCATTGGGGATGCTGGCAGCCCACCCACAGGTGGTTTCATCACACTAGGGAGGCTAGCCAAGGCCAGAGGGCCACGGAGCAGCTCAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016356-'26-41,'26-36,31-41=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACCAGAACACACCATT
R:
CTTGGCTAGCCTCCCTAGTGT
Band lengths:
253-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types