BtaEX6065468 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004582 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr13:54740209-54741134:-
Coord C1 exon
chr13:54740992-54741134
Coord A exon
chr13:54740784-54740893
Coord C2 exon
chr13:54740209-54740367
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTCTTGTCGCATCCCCCAGCCG
3' ss Score
5.88
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CGACATCCACCTGGCCACCCTGCCCCCGGAGCACACAGTCGTCTTCCTCCTGCGCCTGCTCCCTGAGACTCCCCGAGAGGCCTTTGCATTGTGGCAGGTGGCAAGCGAGGACTTCCAGCCCATCCTCGGGGTTCTGCTGGACG
Seq A exon
CCGGCAGGAAGTCGCTGACCTACTTCAACCGTGACCCCAGGGCCACCTTGCAGGAGGTCACCTTTGACCTGCCTGAAGTGAGGAGGATATTCTTTGGGAGTTTCCACAAG
Seq C2 exon
GTGCATGTGGCCGTGGGCCGAGCCAGGGTCAGGCTCTACGTGGACTGCCGGAAGGTGGCCGAGAGGCCCATCGGGGAGGCCGGCGGCCTGCCTGCTGCCGGCTTCGTCATGCTGGGCAGGTTGGCCAAAGCCCGGGGCCCCCGGAGCAGCTCCGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004582-'31-29,'31-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGCACACAGTCGTCTT
R:
CCAACCTGCCCAGCATGAC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]