MmuEX0012209 @ mm10
Exon Skipping
Gene
ENSMUSG00000016356 | Col20a1
Description
collagen, type XX, alpha 1 [Source:MGI Symbol;Acc:MGI:1920618]
Coordinates
chr2:180992853-180994358:+
Coord C1 exon
chr2:180992853-180993008
Coord A exon
chr2:180993243-180993368
Coord C2 exon
chr2:180994200-180994358
Length
126 bp
Sequences
Splice sites
3' ss Seq
GACCCCTCCTCCGCCTCCAGGAG
3' ss Score
9.96
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
TTGAGGATCTGAAGAGCCAATCTTTGGGCAGAGGCAGCCGGAGGCTGGCTGGAGCCACCCTGGAGCCTACCTCCTTGCCTCTGAGGGGCCCAGACTCTGAGAAAACATCTGAGCCCAGCATTGCCTTTACCTTAAGCAGGGACCTGCCCATTCTTG
Seq A exon
GAGTGGCCAGTAAGGATCAGAGGAAACTCAAGCAGGGCCTTGGTGTACAAAACTCTGCTCAGACAACCACAGACCTGGAGAGGCAGAGCCACACTGCAGCCTCAGTGGGAAAGCAAGGGAAGCTGG
Seq C2 exon
ATCACCCCCAGTTCCAATGTACACCCCCAACACCTGCTGATATAATCTTCCTGGTGGACGGGTCCTGGAGCATCGGCCACAACCACTTCCAGCAGGTGAAAGACTTCCTGGCCAGCATCATCACACAATTTGCAATAGGACCAGATAAAGTCCAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016356_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=0.767 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(23.1=74.1)
Main Inclusion Isoform:
ENSMUST00000108856fB1093
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTTTGGGCAGAGGCAGC
R:
GGCCAGGAAGTCTTTCACCTG
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types