Special

ENSMUSG00000025650 @ mm9

Biotype
protein_coding
Gene Symbol
Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108855631-108886920:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
12.01
27.83
0
Alternative 5'ss
26
chr9:108880032-108880057
+
87.99
27.83
0
Intron Retention
77
chr9:108880579-108880655
+
12.73
40.6
0
Intron Retention
268
chr9:108881576-108881843
+
10.07
58.54
0
Intron Retention
150
chr9:108884569-108884718
+
14.28
36.63
0
Intron Retention
611
chr9:108884768-108885378
+
12.85
42.85
0
Intron Retention
152
chr9:108885412-108885563
+
12.16
61.04
0
Intron Retention
92
chr9:108864818-108864909
+
13.42
32.84
0
Intron Retention
88
chr9:108857400-108857487
+
17.6
38.94
0
Intron Retention
116
chr9:108876502-108876617
+
8.35
57.7
0
Intron Retention
80
chr9:108877291-108877370
+
10.68
44.7
0
Intron Retention
67
chr9:108877804-108877870
+
12.81
47.98
0
Intron Retention
169
chr9:108877913-108878081
+
10.14
47.96
0
Intron Retention
187
chr9:108880208-108880394
+
13.06
58.74
0
Intron Retention
112
chr9:108880431-108880542
+
9.88
52.16
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000114270 COL7A1 1-to-1
Human hg19 ENSG00000114270 COL7A1 1-to-1
Rat rn6 ENSRNOG00000020579 Col7a1 1-to-1
Cow bosTau6 ENSBTAG00000019081 COL7A1 1-to-1
Chicken galGal4 ENSGALG00000005811 COL7A1 1-to-1
Chicken galGal3 ENSGALG00000005811 COL7A1 1-to-1
Zebrafish danRer10 ENSDARG00000021720 col7a1 1-to-1
Fruitfly dm6 FBgn0035798 frac 11-to-1