Special

GgaEX1016994 @ galGal4

Exon Skipping

Gene
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9081727-9082463:+
Coord C1 exon
chr12:9081727-9081762
Coord A exon
chr12:9081843-9081902
Coord C2 exon
chr12:9082428-9082463
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTGACACCACACAGGGC
3' ss Score
5.94
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGAGCCAAGGGATCATCCGGAGTCAAGGGGGAAAAG
Seq A exon
GGCACTCCAGGCGTCGGTGTGCGGGGACCACCAGGACAGGATGGGCCTCCAGGCTTGAAG
Seq C2 exon
GGCATACAAGGGGCCTCGGGGCTGAAGGGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811_MULTIEX2-60/78=59-63
Average complexity
C3*
Mappability confidence:
87%=93=95%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):

C1:
PF0139113=Collagen=FE(21.2=100)
A:
PF0139113=Collagen=PD(9.6=25.0),PF0139113=Collagen=PU(27.3=75.0)
C2:
PF0139113=Collagen=FE(18.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGGATCATCCGGAGTCA
R:
CTTGTCACCCTTCAGCCCC
Band lengths:
68-128
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]