HsaEX0016663 @ hg19
Exon Skipping
Gene
ENSG00000114270 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:2214]
Coordinates
chr3:48608294-48609478:-
Coord C1 exon
chr3:48608676-48609478
Coord A exon
chr3:48608534-48608593
Coord C2 exon
chr3:48608294-48608401
Length
60 bp
Sequences
Splice sites
3' ss Seq
GATGCCTCTTTTCCTCAAAGGGT
3' ss Score
7.56
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTCTGATCTCCCAGATCCCAGGACACACCTGAGTTCTTGTGAACCTCTCCTTGGTCCTGTGTTTACAATCCTCCTTTCCCCTGCCCCTGGCTGCCAGCGTTCAGCCTGTGGCCATGCCTGCTCTACCCGGGAGTGGACGTGTTGGGGTTCCCCTCTGAGCGCCCGTGTGTCCGCACTCACGTCTGTGGAGCCAGATGTCTGCACTCGCGTGTGGGCTCCCTGTGCCTGTGCCATGCCTGAACTCCCACCTGTCTATGGTAGTATCTGAGCGTCCCTCTGTCTGTGCTGTCCTGAGATAGGCCATGGTCATGTCTGAGCTCCTGTGAGCCAATTCTTGGTCGCATGTCTGAGTTCCCATGTGTTCATGGTCACATCAGAACTCCCCTGGGAATATTTTCAGCCCGTGTCTGAACTCTGTGCTCATGTTCCTACCCTCTCAAATGCTGTTTGCTGGGTTTTCTTAGGGTCAGAAAGGGGCTCCAGGACCCAAAGGTTTCAAG
Seq A exon
GGTGACCCAGGAGTCGGGGTCCCGGGCTCCCCTGGGCCTCCTGGCCCTCCAGGTGTGAAG
Seq C2 exon
GGAGATCTGGGCCTCCCTGGCCTGCCCGGTGCTCCTGGTGTTGTTGGGTTCCCGGGTCAGACAGGCCCTCGAGGAGAGATGGGTCAGCCAGGCCCTAGTGGAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114270-'94-98,'94-97,95-98
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.0=100)
A:
PF0139113=Collagen=PD(8.6=25.0),PF0139113=Collagen=PU(25.9=75.0)
C2:
PF0139113=Collagen=FE(60.3=100),PF0139113=Collagen=PU(28.8=47.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCATGTTCCTACCCTCT
R:
GGAACCCAACAACACCAGGAG
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)