GgaEX1016994 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9340490-9340886:+
Coord C1 exon
chr12:9340490-9340525
Coord A exon
chr12:9340606-9340665
Coord C2 exon
chr12:9340761-9340886
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTGACACCACACAGGGC
3' ss Score
5.94
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGAGCCAAGGGATCATCCGGAGTCAAGGGGGAAAAG
Seq A exon
GGCACTCCAGGCGTCGGTGTGCGGGGACCACCAGGACAGGATGGGCCTCCAGGCTTGAAG
Seq C2 exon
GGCGACATTGGTTTGCCAGGACCTCCAGGACCCCCGGGCTTAGTGGGCATCGCTGGGGCACCGGGACAGCCAGGCCTGAGAGGGGACAGCGGGCAGCCTGGCCCACCAGGAGCCCCTGGAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'81-86,'81-85,82-86=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.6=100)
A:
PF0139113=Collagen=PD(7.8=20.0),PF0139113=Collagen=PU(26.2=80.0)
C2:
PF0139113=Collagen=FE(67.2=100),PF0139113=Collagen=PU(23.7=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAAGGGATCATCCGGAG
R:
CTGTCCCCTCTCAGGCCTG
Band lengths:
124-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]