GgaEX1016992 @ galGal4
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9081606-9082463:+
Coord C1 exon
chr12:9081606-9081650
Coord A exon
chr12:9081727-9081762
Coord C2 exon
chr12:9082428-9082463
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATGGCTCTGTGTCTTTGCAGGGA
3' ss Score
10.85
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGGAGCCTGGAGGAGCTGGGGAGCCTGGAGACCCCGGCGAAGAT
Seq A exon
GGAGCCAAGGGATCATCCGGAGTCAAGGGGGAAAAG
Seq C2 exon
GGCATACAAGGGGCCTCGGGGCTGAAGGGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811_MULTIEX2-59/78=58-63
Average complexity
C2
Mappability confidence:
88%=94=96%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.9=100)
A:
PF0139113=Collagen=FE(21.2=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCTGGAGGAGCTG
R:
CTTGTCACCCTTCAGCCCC
Band lengths:
80-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]