MmuEX0012348 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108878216-108879303:+
Coord C1 exon
chr9:108878216-108878260
Coord A exon
chr9:108879125-108879160
Coord C2 exon
chr9:108879244-108879303
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACGTATTTCTTATTTTTTAGGGT
3' ss Score
11.31
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGTGAAGCTGGCCGTGCAGGAGGACCTGGGGACCCTGGGGAAGAT
Seq A exon
GGTCAAAAAGGGGCTCCAGGACTCAAAGGTCTTAAG
Seq C2 exon
GGTGAGCCAGGCATTGGGGTTCAGGGCCCCCCTGGCCCAAGTGGTCCTCCAGGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'95-100,'95-99,96-100
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.4=100)
A:
PF0139113=Collagen=FE(20.8=100)
C2:
PF0139113=Collagen=PD(9.4=25.0),PF0139113=Collagen=PU(25.0=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCTGGCCGTGCAG
R:
CTTCATACCTGGAGGACCACT
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: