GgaINT0022912 @ galGal4
Intron Retention
Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9079691-9080098:+
Coord C1 exon
chr12:9079691-9079726
Coord A exon
chr12:9079727-9080062
Coord C2 exon
chr12:9080063-9080098
Length
336 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CATCTCTCCCTCCTTCCCAGGGC
3' ss Score
10.04
Exon sequences
Seq C1 exon
GGCCCGCAGGGCTTTAGAGGGCCCCCTGGCCCCTCA
Seq A exon
GTAAGTACCCCCGGGTGGGTGCTGCATGGTGACACTGTGCTCATCCCCGAGGGAGCTTTAGGGGCAGGCGGGGCTGCTTGGAGGTGGTGTGGTCCCGCTCCCCTGCTGGCTATAATGTGCTTCTTTGCAGGGCATGCCAGGTTTCCCCGGTGTGCTGGGCCGCCCGGTAGGTGTTTGTCCCCAGCATGTCACTGTCCCCCTGGCTCCTGCTAGGTGTGTGCTAGGCATGGCGCATCCTGCTGGGGGCTGGCCAGGCTCGTCCCTGCATGGCATGGGTGCTTCCCAGAGCCACTGTGCACCACGGACATCCTGACCACATCTCTCCCTCCTTCCCAG
Seq C2 exon
GGCAATCAGGGAGAGCCAGGGCCACCAGGACCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:78
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.7=100)
A:
NA
C2:
PF0139113=Collagen=FE(17.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- GgaEX0008179
- GgaEX0008181
- GgaEX1016952
- GgaEX1016953
- GgaEX1016954
- GgaEX1016955
- GgaEX1016956
- GgaEX1016957
- GgaEX1016958
- GgaEX1016959
- GgaEX1016961
- GgaEX1016962
- GgaEX1016963
- GgaEX1016964
- GgaEX1016965
- GgaEX1016966
- GgaEX1016967
- GgaEX1016968
- GgaEX1016969
- GgaEX1016971
- GgaEX1016972
- GgaEX1016973
- GgaEX1016974
- GgaEX1016975
- GgaEX1016976
- GgaEX1016977
- GgaEX1016978
- GgaEX1016979
- GgaEX1016981
- GgaEX1016982
- GgaEX1016983
- GgaEX1017009
- GgaEX1017010
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]