Special

GgaEX1016976 @ galGal4

Exon Skipping

Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9076610-9081360:+
Coord C1 exon
chr12:9076610-9076645
Coord A exon
chr12:9076734-9076838
Coord C2 exon
chr12:9081319-9081360
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGACACCACTCTCTCGGCAGGGC
3' ss Score
8.92
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GGAGACAAAGGTGATGCCGGAGCCCCTGGCAGAGAC
Seq A exon
GGCCACAGCGGTGCCAAAGGCGAGCAGGGGGACAGAGGCATGCCAGGCCTCCCTGGCCCCCCTGGTGTCCCCGGTGTCCCAGGGCAGGTTGGCCCCCCAGGCCAG
Seq C2 exon
GGTGAGCCGGCGCTGCTGGAGGGCGTGCTGCTGGGTGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811_MULTIEX2-35/78=34-56
Average complexity
C2
Mappability confidence:
96%=100=96%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0139113=Collagen=FE(10.8=100),PF0139113=Collagen=FE(18.6=100)

							
A:
PF0139113=Collagen=PD(20.6=60.0),PF0139113=Collagen=FE(57.6=100),PF0139113=Collagen=PU(36.1=62.9)

							
C2:
PF0139113=Collagen=PD(6.9=28.6),PF0139113=Collagen=PU(5.8=21.4)

						

					

				








    
Main Inclusion Isoform:
ENSGALP00000009317





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
chr3:48576676-48576771 
HIGH PSI
HsaEX6055813
(COL7A1)
Human
(hg19)
chr3:48614109-48614204 
HIGH PSI
HsaEX6055813
(COL7A1)
Mouse
(mm10)
chr9:108971702-108971797 
HIGH PSI
MmuEX6069093
(Col7a1)
Mouse
(mm9)
chr9:108873747-108873842 
HIGH PSI
MmuEX6069093
(Col7a1)
Rat
(rn6)
chr8:117713438-117713533 
HIGH PSI
RnoEX6037770
(Col7a1)
Cow
(bosTau6)
chr22:51877421-51877516 
HIGH PSI
BtaEX6095669
(COL7A1)
Zebrafish
(danRer10)
chr6:40227507-40227611 
HIGH PSI
DreEX6023284
(col7a1)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]











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