RnoEX6037770 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117713296-117713687:+
Coord C1 exon
chr8:117713296-117713331
Coord A exon
chr8:117713438-117713533
Coord C2 exon
chr8:117713652-117713687
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCTAACTGTATCCTCCACAGGGT
3' ss Score
8.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAGAAAAGGGAGATTCGGGTGTCCCTGGAAGGGAA
Seq A exon
GGTCCTGACGGTCCCAAGGGTGAACGCGGAGCTCCTGGTAATCCCGGACTCCAGGGTCCTCCGGGTCTCCCAGGGCAGGTCGGTCCTCCCGGCCAG
Seq C2 exon
GGTTTCCCTGGTGTCCCAGGAGTTACAGGTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'72-69,'72-68,73-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(30.0=56.2)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAAGGGAGATTCGGGTG
R:
TTAGGACCTGTAACTCCTGGGAC
Band lengths:
71-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]