MmuEX6069093 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108971559-108971947:+
Coord C1 exon
chr9:108971559-108971594
Coord A exon
chr9:108971702-108971797
Coord C2 exon
chr9:108971912-108971947
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGTAACTGTATCCTCCACAGGGC
3' ss Score
8.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAGAAAAGGGAGATTCGGGTGCCCCTGGAAGAGAA
Seq A exon
GGCCCTGATGGCCCCAAGGGTGAACGTGGAGCTCCTGGCAATCCTGGACTCCAGGGTCCTCCGGGTCTCCCAGGGCAGGTCGGTCCTCCCGGCCAG
Seq C2 exon
GGTTTCCCTGGTGTCCCAGGAATTACGGGTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'66-94,'66-83,75-94=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.1=100)
A:
PF0139113=Collagen=FE(39.7=100),PF0139113=Collagen=PU(31.1=59.4)
C2:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAAGGGAGATTCGGGTG
R:
TTAGGACCCGTAATTCCTGGGA
Band lengths:
71-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types