BtaINT0042357 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51880131-51880328:+
Coord C1 exon
chr22:51880131-51880166
Coord A exon
chr22:51880167-51880292
Coord C2 exon
chr22:51880293-51880328
Length
126 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GCTCTGTCTCTCTCCCACAGGGC
3' ss Score
13.3
Exon sequences
Seq C1 exon
GGTCTGCAAGGTCCACGGGGGACCCCTGGCCCGGCG
Seq A exon
GTGAGTACCCCAGAATCCTGCTCCCTTCTTAATGGCACCCCCTACAATGGGCAGTCCTGCCTCAGTTTCCCTGGAAGGGTAGGACTGACTCCCTGCCCCCAATTTGGCTCTGTCTCTCTCCCACAG
Seq C2 exon
GGCGGCCATGGAGACCCTGGACCACCCGGGGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081:ENSBTAT00000025418:80
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.0=100)
A:
NA
C2:
PF0139113=Collagen=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]