RnoEX0022906 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148283751-148284180:+
Coord C1 exon
chr5:148283751-148283810
Coord A exon
chr5:148283950-148283997
Coord C2 exon
chr5:148284127-148284180
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCAACTCCTACCCAGGGT
3' ss Score
5.18
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGTGAACCGGGAGAGTGTTCCTGTCCTTCTCGAGGAGAGCCCATCTTCTCCGGCATGCCG
Seq A exon
GGTGCTCCGGGACTGTGGATGGGCAGCTCCTCGCAGCCGGGCCCGCAG
Seq C2 exon
GGTCCCCCAGGTGTCCCCGGACCACCAGGTCCCCCCGGAATGCCTGGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(15.4=50.0)
A:
PF0139113=Collagen=FE(23.1=100)
C2:
PF0139113=Collagen=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCGGGAGAGTGTTCCTG
R:
CTGCAATCCAGGCATTCCGG
Band lengths:
112-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]