DreEX0002984 @ danRer10
Exon Skipping
Gene
ENSDARG00000009194 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr19:38928614-38930232:-
Coord C1 exon
chr19:38930176-38930232
Coord A exon
chr19:38930018-38930059
Coord C2 exon
chr19:38928614-38928685
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTAATTGCATTTTTTTAAAGGGA
3' ss Score
6.94
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
GGTGAACCAGGAGAGTGCAACTGTTTGCATAATATGTTTCCTGGAACTGGCGGACCT
Seq A exon
GGAGTCCCAGGTGGTGAAAACAGGGTACAGCCAGGTCCTCAG
Seq C2 exon
GGGCCTCCTGGACCACCGGGCCCTCCAGGTCCTCCAGGCCCCCAGGGCTTTACTGGAATCCCAGGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009194_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.916 A=0.754 C2=0.753
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.2=26.3),PF0139113=Collagen=PU(7.9=26.3)
A:
PF0139113=Collagen=FE(20.6=100)
C2:
PF0139113=Collagen=FE(36.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACCAGGAGAGTGCAAC
R:
CTGTGGGCCTGGGATTCCA
Band lengths:
129-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]