RnoEX0022901 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148257642-148259441:+
Coord C1 exon
chr5:148257642-148257796
Coord A exon
chr5:148259013-148259114
Coord C2 exon
chr5:148259335-148259441
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTGTGGTCTTTTAGAAC
3' ss Score
10.83
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
TAGAGAACTCGGGACGCGGAAAAGCTGGGGACACCGCAGACTGGCAGGGAGAGATCGAGGATTCCCCTATGGGTCTGGACCCCTGGCCCTGCTTCCCATAGCTGGCGGCCTTGGGGCTGCCAGGATTGCTCAGTGAAAGGCTCCCCGGGCCGTTG
Seq A exon
AACCCTCTAGACCTCTTCTCAACCCAGCGCCAAAGCTCTCCACACAGCCAGAAGCTGCCTGGAACTTGCTTCTGTGTTTCAGTCATTCTTCCTCCCAGGCTG
Seq C2 exon
GTGCTGAGGCTGTAGCTGATCTCTCTGGACCAACATGTTGGTATCCTGGGCTCCCGGCCTATGGGTGCTTGGGCTCTGGGCCACCTTCAGCCATGGAACAAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGGAAAAGCTGGGGAC
R:
TTGTTCCATGGCTGAAGGTGG
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]