MmuEX0012169 @ mm10
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:130047840-130049739:+
Coord C1 exon
chr4:130047840-130048083
Coord A exon
chr4:130049327-130049426
Coord C2 exon
chr4:130049633-130049739
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTGTGATCTTTTAGAAC
3' ss Score
10.73
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGAACCGCCCTCTTCCCTCTCCAGGAGCGGCCGGCAGTTCCTGCAAGCAGGCGTGTGAGTGTGCGCGCACGCTGCGCTGCACTCAGTCTAGAGAACTCAGGACGTGGAAAAGCTGGGGTCAGCGCAGACTGGCAGGGAGAGATCGAGGATCCTCCTGTGGGCCGTGGACCCCTGGCCCTGCTTCCCATAGCTGGCAGCCTTAGGGCTGCCAGGATTGCTCAGTGAAGGGCTCCGCGGGCCGTTG
Seq A exon
AACCCTCTAGACCTCTCCTCAACCCAGCGGCAAGCTCATGACATAGCAGAAGCTGTCTGGGCCTTGCTTCTGTGCTTCAGCTAGGCTTGTGCTCGGGCTG
Seq C2 exon
GTGCCGAGGCTGCAGCTGATCTCTCTGGACCAGCATGTTGACATCCTGGGCTCCCGGCCTGTGGGTGCTCGGGCTCTGGGCCACCTTCAGCCATGGGACAAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGACGTGGAAAAGCTGG
R:
TTTGTCCCATGGCTGAAGGTG
Band lengths:
251-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types