MmuEX0012169 @ mm9
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:129725084-129726983:+
Coord C1 exon
chr4:129725084-129725327
Coord A exon
chr4:129726571-129726670
Coord C2 exon
chr4:129726877-129726983
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTGTGATCTTTTAGAAC
3' ss Score
10.73
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGAACCGCCCTCTTCCCTCTCCAGGAGCGGCCGGCAGTTCCTGCAAGCAGGCGTGTGAGTGTGCGCGCACGCTGCGCTGCACTCAGTCTAGAGAACTCAGGACGTGGAAAAGCTGGGGTCAGCGCAGACTGGCAGGGAGAGATCGAGGATCCTCCTGTGGGCCGTGGACCCCTGGCCCTGCTTCCCATAGCTGGCAGCCTTAGGGCTGCCAGGATTGCTCAGTGAAGGGCTCCGCGGGCCGTTG
Seq A exon
AACCCTCTAGACCTCTCCTCAACCCAGCGGCAAGCTCATGACATAGCAGAAGCTGTCTGGGCCTTGCTTCTGTGCTTCAGCTAGGCTTGTGCTCGGGCTG
Seq C2 exon
GTGCCGAGGCTGCAGCTGATCTCTCTGGACCAGCATGTTGACATCCTGGGCTCCCGGCCTGTGGGTGCTCGGGCTCTGGGCCACCTTCAGCCATGGGACAAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGACGTGGAAAAGCTGG
R:
TTTGTCCCATGGCTGAAGGTG
Band lengths:
251-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: