RnoEX0022902 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148261408-148262678:+
Coord C1 exon
chr5:148261408-148261482
Coord A exon
chr5:148261566-148261683
Coord C2 exon
chr5:148262555-148262678
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTGATGTCCCGAAGGCT
3' ss Score
6.95
5' ss Seq
TCGGTAAAG
5' ss Score
6.18
Exon sequences
Seq C1 exon
GTGAGCGCTGCCCAACTTCACAGGAAGAAGGACTCAAGCTGGAACACAGCAGTGACCCGTCAACCAACATGACTG
Seq A exon
GCTTCAACCTAATCCGCAGGCTGAACCTTATGAAGACATCCGCCATCAAAAAGATCCGCAACCCCAAGGGGCCTCTCATCTTGCGACTGGGGGCTGCCCCACTGACCCAAGCAACTCG
Seq C2 exon
ACGAGTGTTCCCTCGGGGCCTCCCCGAGGAGTTTGCCCTGGTCCTGACGGTCCTTCTGAAGAAACACACCTTCCGGAATACATGGTACTTATTCCAAGTGACTGACGCAAATGGGTACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0221019=Laminin_G_2=PU(16.7=45.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGCTGCCCAACTTC
R:
GGTACCCATTTGCGTCAGTCA
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]