BtaEX6012389 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122559794-122561064:+
Coord C1 exon
chr2:122559794-122559868
Coord A exon
chr2:122559976-122560093
Coord C2 exon
chr2:122560941-122561064
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATCTGGTGTCTCCCCTAAAGGCT
3' ss Score
6.41
5' ss Seq
TCGGTAAAG
5' ss Score
6.18
Exon sequences
Seq C1 exon
GGGAGCAGTGCCCACCTTCTCAGCAAGAAGGACTCAAGTTGGAACACAGAAGTGACTTATCGACCAACGTGACTG
Seq A exon
GCTTCAACCTCATCCACCGACTCAGCCTCATGAAGACATCTGCTGTCAAGAAGATCCGAAATCCCAAGGGACCATTCATCTTGCGACTGGGAGCAGTCTCAGTCACCCAGCCCACTCG
Seq C2 exon
ACGCGTGTTCCCTCGGGGCCTTCCCAGTGAGTTTGCCCTGGTGCTGACACTATTAATGAAGAAACACACCCACCGGAACACGTGGTATTTGTTTCAAGTGACCGATGGAGACGGGTACCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0221019=Laminin_G_2=PU(17.3=45.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCAGTGCCCACCTTC
R:
GGTACCCGTCTCCATCGGTC
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]