HsaEX6029679 @ hg19
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Coordinates
chr1:32164084-32165716:-
Coord C1 exon
chr1:32165642-32165716
Coord A exon
chr1:32165414-32165531
Coord C2 exon
chr1:32164084-32164207
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACCTGATGTCTCCCCCAAAGGCT
3' ss Score
7.19
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
Exon sequences
Seq C1 exon
GTGCACAATGCCCACCTTCACAGCAGGAAGGACTCAAATTGGAACACAGTAGTAGCCTGCCAGCCAACGTGACTG
Seq A exon
GCTTCAACCTCATCCACCGACTCAGCCTCATGAAGACGTCTGCCATCAAGAAGATCCGCAACCCCAAGGGGCCTCTCATCCTGCGCCTGGGGGCGGCCCCCGTGACCCAGCCCACGCG
Seq C2 exon
AAGAGTATTCCCTCGGGGTCTCCCGGAGGAGTTTGCCCTGGTGCTGACACTACTGCTGAAGAAACACACCCACCAGAAGACGTGGTATCTGTTTCAAGTGACCGATGCAAATGGGTATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'2-5,'2-2,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0221019=Laminin_G_2=PU(17.6=45.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGCCCACCTTCACAGC
R:
TGTGGATACCCATTTGCATCGG
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)