GgaEX1016389 @ galGal4
Exon Skipping
Gene
ENSGALG00000026836 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr23:4935779-4937756:-
Coord C1 exon
chr23:4937694-4937756
Coord A exon
chr23:4937496-4937613
Coord C2 exon
chr23:4935779-4935902
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCACCCCCTCCATCCCCCAGGCT
3' ss Score
9.52
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGACGCCGTGCCCACGGCTCTGGGATGAGGACCTGGTTGGGAACAAGTATGAGAACGTGACGG
Seq A exon
GCTTTAACCTCATTAAGCGCTTCGACCTGCTGAAGATCTCCTCCGTCAAGAAAGTGCGTGGCGCGCGGGGCACGGTGCTGCTGCGGCTGGGGGCCGTGCCGCTGGTGCAGCCCACACG
Seq C2 exon
GCAGGTGTTCCCCCACGGGCTGCCCCCCGAGTTCACCATCATCCTCACCTTGTTGCTGAAGAAGAACAGCACCGGGGAGCATTGGTACCTCTTCCAGGTCACCGACCGCCATGGCTACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026836-'2-5,'2-2,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0221019=Laminin_G_2=PU(20.7=54.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCTCTGGGATGAGGA
R:
GGAAGAGGTACCAATGCTCCC
Band lengths:
146-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]