DreEX6073888 @ danRer10
Exon Skipping
Gene
ENSDARG00000009194 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr19:39009757-39024694:-
Coord C1 exon
chr19:39024626-39024694
Coord A exon
chr19:39022487-39022604
Coord C2 exon
chr19:39009757-39009880
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATTGATCGCCCGATCTGCAGGTT
3' ss Score
5.92
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTGTCATTTGCCCGTCCATACAGGTAGAAGACTGGAAGTTTCCTCAAACTGCCAGACACAACATTACAG
Seq A exon
GTTTCAATCTGGCACGCCGATTCTCTCTGCTGATGAACAGTGAGGTCAAGAAAATCCGAAACCCAAGAGGTCCTGTCATCCTCCGCCTAGGCAAAGTCCAACTCATCCAACCCACAAA
Seq C2 exon
TCAAGTGTTTCCTCATGGACTTCCAGAGGAGTTCACCCTGGTCTTCACCCTGCTGCTAAAGAAGAAATCATTGAATGAGAGCATTTACCTGTTCCAGATATCTGATGAGCACGGATATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009194-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0221019=Laminin_G_2=PU(16.4=45.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGCCCGTCCATACAGGT
R:
TGAGGATATCCGTGCTCATCAGA
Band lengths:
188-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]