MmuEX6096415 @ mm10
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:130051655-130052975:+
Coord C1 exon
chr4:130051655-130051729
Coord A exon
chr4:130051817-130051934
Coord C2 exon
chr4:130052852-130052975
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTGGTGTCCCAAAGGCT
3' ss Score
7.78
5' ss Seq
TCGGTAAAG
5' ss Score
6.18
Exon sequences
Seq C1 exon
GTGAGCGGTGCCCAACTTCACAGCAAGAAGGACTCAAGCTAGAACACAGTAGTGACCCATCAACCAACGTGACTG
Seq A exon
GCTTCAACCTAATCCGCCGACTGAACCTCATGAAGACATCTGCCATCAAGAAGATCCGCAACCCCAAGGGGCCACTCATCTTGAGGCTGGGGGCTGCCCCAGTGACCCAACCAACTCG
Seq C2 exon
ACGAGTGTTCCCTCGAGGCCTCCCAGAGGAGTTTGCCCTGGTCCTGACAGTGCTTCTGAAGAAACACACCTTCCGGAACACATGGTACTTGTTCCAAGTGACTGATGCAAATGGGTACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690-'7-8,'7-7,9-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0221019=Laminin_G_2=PU(16.1=42.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGGTGCCCAACTTC
R:
GGTACCCATTTGCATCAGTCACT
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types