BtaEX0009813 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004664 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr11:98914503-98931680:+
Coord C1 exon
chr11:98914503-98931119
Coord A exon
chr11:98931371-98931463
Coord C2 exon
chr11:98931549-98931680
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCCCCCACCCGCACCCCCAGGAC
3' ss Score
7.86
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
Exon sequences
Seq C1 exon
TGAACACGGGAGAAAGCGAGGTACTGTGAACCGAAGAGACAATTAGGAAATGGCTCTGCCCAGACGACTGGGTCACACGATCTTACTTTGCAACAAGGATCAGAAACTGAGATGGACTCCTGGGGAACGGGAGCGGGATCCTGGGTCTGGCTCGAGGCACTCACCTTTCAGAAGCTGCAGCTCCACGGTATCCCGTAGATGCTTCCATTTTAGCCCGGGGGGCTTGTAGACTGCGAAGAGCCCCTGCAGCCGAGCCAGGCCGGCGGACCCCATACCTGAAGCCCGCGGGACTCGAGCTCGCAGAACAGCTGAAAGCGGACGGAAGTGCTGTATGGTCCCGCCCCCAAATGTACTATTACCAATGGGCGCCGCCATGTTTCACGGCCGGAAGAGGTTCGATTCTTATTATCCTCGGGGGGAAAACGTGCGACGGAGAAGGACGTAGGGTCCGGTGCTGAACCACAAACGTGGCGAGGCTTACTTGGAGACCTCTCTTGGAG
Seq A exon
GACGTCTGACGGTCCCCGCTGCCATGGCGACACTGCTGCGCGGGGTCCTGCGCCCGCTTTACGCCTTCCGGGGCGGTCCCGGCCCTCCTGCAG
Seq C2 exon
GTGTTCCCTTCAGAGCCGTGAGCCATGGCACCGGCCTGCTCTACCCCGAACACATCCCCACCTCCGTGCTGCAGAAGGTGCTGCTGGCCGCCGGCTCTGCCGGGATGGCGCTGTACGATCCCTATCGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004664_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.042 C2=0.067
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF050198=Coq4=PU(28.6=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGAAGAGGTTCGATTCTT
R:
GATGTGTTCGGGGTAGAGCAG
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development