BtaEX0009814 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004664 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr11:98914503-98933092:+
Coord C1 exon
chr11:98914503-98931119
Coord A exon
chr11:98931549-98931680
Coord C2 exon
chr11:98932996-98933092
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTCTTGCCCCGCAGGTG
3' ss Score
12.11
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
TGAACACGGGAGAAAGCGAGGTACTGTGAACCGAAGAGACAATTAGGAAATGGCTCTGCCCAGACGACTGGGTCACACGATCTTACTTTGCAACAAGGATCAGAAACTGAGATGGACTCCTGGGGAACGGGAGCGGGATCCTGGGTCTGGCTCGAGGCACTCACCTTTCAGAAGCTGCAGCTCCACGGTATCCCGTAGATGCTTCCATTTTAGCCCGGGGGGCTTGTAGACTGCGAAGAGCCCCTGCAGCCGAGCCAGGCCGGCGGACCCCATACCTGAAGCCCGCGGGACTCGAGCTCGCAGAACAGCTGAAAGCGGACGGAAGTGCTGTATGGTCCCGCCCCCAAATGTACTATTACCAATGGGCGCCGCCATGTTTCACGGCCGGAAGAGGTTCGATTCTTATTATCCTCGGGGGGAAAACGTGCGACGGAGAAGGACGTAGGGTCCGGTGCTGAACCACAAACGTGGCGAGGCTTACTTGGAGACCTCTCTTGGAG
Seq A exon
GTGTTCCCTTCAGAGCCGTGAGCCATGGCACCGGCCTGCTCTACCCCGAACACATCCCCACCTCCGTGCTGCAGAAGGTGCTGCTGGCCGCCGGCTCTGCCGGGATGGCGCTGTACGATCCCTATCGCCACG
Seq C2 exon
ACATGGTTGCAGTTCTGGGAGAGACCACAGGACGCCGTACCCTGAAGGTCCTCAGGGACCAGATGAAGAGGGATCCAGAGGGTGCCCAGATCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004664_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.067 C2=0.364
Domain overlap (PFAM):
C1:
NA
A:
PF050198=Coq4=PU(28.6=66.7)
C2:
PF050198=Coq4=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGCCCCCAAATGTACTAT
R:
CACCCTCTGGATCCCTCTTCA
Band lengths:
249-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development