HsaEX6063222 @ hg38
Exon Skipping
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr9:128322536-128325239:+
Coord C1 exon
chr9:128322536-128322928
Coord A exon
chr9:128323016-128323147
Coord C2 exon
chr9:128325143-128325239
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTTCTTGCCCCGCAGAAA
3' ss Score
12.41
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GGGAAAACCGGCTGTGGAGAAGGAAATAGGGCCCGGCGCTGAGTGAGCGTGGTTGCGTGTCCTTTGCAGACACTTTCTGGGGCGAGGTGACATGGCGAGAGTCTTGGATCGGTGGACGTAGACGGTAGACAGTTCGCGTGCGTTTCCTTCGCCTACTTGGCCTACATGCCTTCTGCCCGTGAAGCGATGTTTCCCCTCGAAAGGCCGTAGGCTACGCCGTCAGAATCGGTTTTTCAGTGAGTTTTGACCCCTCCGACGCTCCGTCGCCTGACAGAATCGCGGCGTTCTTCGTACCCGCCCATCCTCCGCGGACGCCCGCTGCCATGGCGACTCTGCTGCGCCCTGTCCTCCGTCGGCTCTGCGGGCTCCCGGGCCTACAGCGGCCTGCGGCAG
Seq A exon
AAATGCCCCTCCGGGCTAGGAGCGACGGCGCCGGCCCGCTATACTCGCACCACCTCCCCACCTCCCCGCTGCAGAAAGGGCTGTTGGCCGCCGGCTCCGCGGCGATGGCGCTCTATAACCCCTACCGCCACG
Seq C2 exon
ACATGGTCGCAGTTCTAGGGGAGACCACAGGACACCGCACCCTGAAGGTCCTCAGGGACCAGATGAGGAGGGATCCAGAGGGTGCCCAGATCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113-'0-2,'0-0,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.335 C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
PF050198=Coq4=PU(13.5=66.7)
C2:
PF050198=Coq4=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGATGTTTCCCCTCGAA
R:
TGTGGTCTCCCCTAGAACTGC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains