GgaEX1017221 @ galGal4
Exon Skipping
Gene
ENSGALG00000004927 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr17:4986571-4987536:-
Coord C1 exon
chr17:4987464-4987536
Coord A exon
chr17:4987205-4987384
Coord C2 exon
chr17:4986571-4986667
Length
180 bp
Sequences
Splice sites
3' ss Seq
GCCACCGCCTCTCCCCGCAGGCA
3' ss Score
12.53
5' ss Seq
ACGGTGCGT
5' ss Score
10.25
Exon sequences
Seq C1 exon
TTCCGGGGCTGCGCCATGCTGCGGGGGGCGGCCGTGCGGGCCGCGCTGCTGCGGGCGGTGCGCGGCGCTCCGG
Seq A exon
GCAGAGCCGGGTTGGGCCGCGCCGTGCCCCGCGCTGAGGAGGAGGAGGAGGAGGAGGAAGAGCGGCAGCGGGGGGGGCGCGTCCCGCTGTACCCCGGGCACATCCCCACCACCCCGCTGCAGAAAGCGCTGCTGGCGGCCGGCTCGGCGTGCGCGGCGCTGTGGGACCCCTACAGGCACG
Seq C2 exon
ACATGGTGGCGGTCCTCGGCGAGACCACGGGCTGCCTTGCCCTGCCCAAGCTGCGAGACAGGATGAGGAATGACCCCGAAGGTTACCGCATCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.492 C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
PF050198=Coq4=PU(13.6=49.2)
C2:
PF050198=Coq4=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]