RnoEX6016214 @ rn6
Exon Skipping
Gene
ENSRNOG00000026691 | Coq4
Description
coenzyme Q4 [Source:RGD Symbol;Acc:1304638]
Coordinates
chr3:8349185-8350835:+
Coord C1 exon
chr3:8349185-8349462
Coord A exon
chr3:8349542-8349673
Coord C2 exon
chr3:8350739-8350835
Length
132 bp
Sequences
Splice sites
3' ss Seq
ACCTCTTTCCTGCCCCGCAGATG
3' ss Score
13.76
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
ACGTTATAAATAACGCCTGGTTCACAGCAGTTATCTTACATCAGTGGCAAACAGATCTTGTTGCTTTTCTTCTCATGCTCCTGTCTATATTACAACATCTCCGATCAAAAAAAGCCACAGTGAGTGCAGTTCCCAAGTAGTCTTTTGACTTCTCGGGCCTCCGTCTTACCTGAGGAGCCCCGCCCATCCACCGCGGATGTCCGCTGCCATGGCGACCCTGCTGCTTCGCTCCCAGCGCCTCCACCGCAGTCTCCGGCACCGTACGCGGCCAACTGTAG
Seq A exon
ATGTGCTCCTCAGGGCCGCGAGCCATGGCGCCCGCCTGCTGTACCCAGACCACATCCCTACTACGCCGCTGCAGAAGATGCTGCTGGCCGCCGGCGCGGCGGGAATGGCGCTCTACAATCCCTATCGCCACG
Seq C2 exon
ACATGGTTGCAGTTCTAGGGGAGACCACAGGATGCCACACCCTGAAATTCCTCAGGGACCAGATGAAGAAGGATCCAGAGGGTGCCCAGATTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026691-'1-2,'1-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
PF050198=Coq4=PU(13.5=66.7)
C2:
PF050198=Coq4=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTGAGTGCAGTTCCCAA
R:
GGCACCCTCTGGATCCTTCTT
Band lengths:
249-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]