HsaEX6063222 @ hg19
Exon Skipping
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19693]
Coordinates
chr9:131084815-131087518:+
Coord C1 exon
chr9:131084815-131085207
Coord A exon
chr9:131085295-131085426
Coord C2 exon
chr9:131087422-131087518
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTTCTTGCCCCGCAGAAA
3' ss Score
12.41
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GGGAAAACCGGCTGTGGAGAAGGAAATAGGGCCCGGCGCTGAGTGAGCGTGGTTGCGTGTCCTTTGCAGACACTTTCTGGGGCGAGGTGACATGGCGAGAGTCTTGGATCGGTGGACGTAGACGGTAGACAGTTCGCGTGCGTTTCCTTCGCCTACTTGGCCTACATGCCTTCTGCCCGTGAAGCGATGTTTCCCCTCGAAAGGCCGTAGGCTACGCCGTCAGAATCGGTTTTTCAGTGAGTTTTGACCCCTCCGACGCTCCGTCGCCTGACAGAATCGCGGCGTTCTTCGTACCCGCCCATCCTCCGCGGACGCCCGCTGCCATGGCGACTCTGCTGCGCCCTGTCCTCCGTCGGCTCTGCGGGCTCCCGGGCCTACAGCGGCCTGCGGCAG
Seq A exon
AAATGCCCCTCCGGGCTAGGAGCGACGGCGCCGGCCCGCTATACTCGCACCACCTCCCCACCTCCCCGCTGCAGAAAGGGCTGTTGGCCGCCGGCTCCGCGGCGATGGCGCTCTATAACCCCTACCGCCACG
Seq C2 exon
ACATGGTCGCAGTTCTAGGGGAGACCACAGGACACCGCACCCTGAAGGTCCTCAGGGACCAGATGAGGAGGGATCCAGAGGGTGCCCAGATCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.370 C2=0.495
Domain overlap (PFAM):
C1:
NO
A:
PF050198=Coq4=PU(13.5=66.7)
C2:
PF050198=Coq4=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGATGTTTCCCCTCGAA
R:
TGTGGTCTCCCCTAGAACTGC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)