MmuEX6100096 @ mm9
Exon Skipping
Gene
ENSMUSG00000026798 | Coq4
Description
coenzyme Q4 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098826]
Coordinates
chr2:29643013-29645519:+
Coord C1 exon
chr2:29643013-29643877
Coord A exon
chr2:29643957-29644088
Coord C2 exon
chr2:29645423-29645519
Length
132 bp
Sequences
Splice sites
3' ss Seq
TACCTCTTTTCTGCTCGCAGATG
3' ss Score
10.84
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTTCTCATATATCCCAGGCTGCCCTCAAACTTGCTAAGTTGCCGAGAATTCATTACTTTTCTGTCTCCACTTTTCCAAGATCTGGAGTGACGAGTAATTCACATCAGGCTTGGTTTTTGAGACAAGGTCTCTAGTACTGCCTTCGTACTTAAGAAATAGCCAAGAAGGATCTCGAACTGATCCTACGGCCTCCAGGTTTCAAATGCTGGGTTGACAGGCCTACGTTATAAATAACGCCTGGCTCACAGCAGTTGTTTTACTTCAGTGGCAAACAGATCTTGTGGCTTTCCTTCTCATGCTCCTGTCCATATTACAACATCTCCGATCAAAAAGCCACAGTGAGTGCAGTGTCCCAGGAGTCTTTTGACTTCTCGGGCCTCCGTAGTACCTGCGGAGCCCCGCCTAACCACGCGGACGTCCGCTGCCATGGCGACCCTGCTGCTGCTTCGCTCCCTGCGCCTCCACCGCAGTCTTCGGCCCCGTACGCGGCCAGCTGTAG
Seq A exon
ATGTACCCCTCAGGGCCGGGAGCCATGGCGCCCGCCTGCTGTACCCGGACCACATCCCAACCACCCCGCTGCAAAAGATGCTGCTGGCTGCGGGCGCGGCGGGAATGGCTCTCTACAACCCCTATCGCCACG
Seq C2 exon
ACATGGTTGCAGTTCTAGGGGAGACCACAGGATGCCACACCCTGAAATTCCTCAGGGACCAGATGAAGAAGGATCCAGAGGGTGCCCAGATTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026798-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.074 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
PF050198=Coq4=PU(13.5=66.7)
C2:
PF050198=Coq4=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTCCTTCTCATGCTCC
R:
GTGGTCTCCCCTAGAACTGCA
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: