DreEX6013453 @ danRer10
Exon Skipping
Gene
ENSDARG00000104733 | coq4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-218]
Coordinates
chr5:53775797-53776780:-
Coord C1 exon
chr5:53776742-53776780
Coord A exon
chr5:53776271-53776393
Coord C2 exon
chr5:53775797-53775893
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCTCTTGTTCTCAGTAC
3' ss Score
9.03
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATTTGACATCACTTTACAGATGGCGGCTAGTTCTCTGAG
Seq A exon
TACTCACCGAAGAGAAGTATGATGGAAGATTGTATCCAAGCCACATTCCAACAAGCACTGTTCAGAAGGCTATTTTGGCTGTAGGTTCCGGAGTTGCTGCCCTTAAAAACCCCTATAGACATG
Seq C2 exon
ATATGGTTGCAGTGCTTGGAGAAACCACAGGGCACCAGACCCTAATAAAGTTGAGAGATCGGATGAGAAATGACCCTGAAGGTTCTACTATTCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104733-'1-2,'1-1,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.012 C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
PF050198=Coq4=PU(13.5=71.4)
C2:
PF050198=Coq4=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACTTTACAGATGGCGGCT
R:
AGAAGAATAGTAGAACCTTCAGGG
Band lengths:
130-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]