MmuEX6100096 @ mm10
Exon Skipping
Gene
ENSMUSG00000026798 | Coq4
Description
coenzyme Q4 [Source:MGI Symbol;Acc:MGI:1098826]
Coordinates
chr2:29787493-29789999:+
Coord C1 exon
chr2:29787493-29788357
Coord A exon
chr2:29788437-29788568
Coord C2 exon
chr2:29789903-29789999
Length
132 bp
Sequences
Splice sites
3' ss Seq
TACCTCTTTTCTGCTCGCAGATG
3' ss Score
10.84
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTTCTCATATATCCCAGGCTGCCCTCAAACTTGCTAAGTTGCCGAGAATTCATTACTTTTCTGTCTCCACTTTTCCAAGATCTGGAGTGACGAGTAATTCACATCAGGCTTGGTTTTTGAGACAAGGTCTCTAGTACTGCCTTCGTACTTAAGAAATAGCCAAGAAGGATCTCGAACTGATCCTACGGCCTCCAGGTTTCAAATGCTGGGTTGACAGGCCTACGTTATAAATAACGCCTGGCTCACAGCAGTTGTTTTACTTCAGTGGCAAACAGATCTTGTGGCTTTCCTTCTCATGCTCCTGTCCATATTACAACATCTCCGATCAAAAAGCCACAGTGAGTGCAGTGTCCCAGGAGTCTTTTGACTTCTCGGGCCTCCGTAGTACCTGCGGAGCCCCGCCTAACCACGCGGACGTCCGCTGCCATGGCGACCCTGCTGCTGCTTCGCTCCCTGCGCCTCCACCGCAGTCTTCGGCCCCGTACGCGGCCAGCTGTAG
Seq A exon
ATGTACCCCTCAGGGCCGGGAGCCATGGCGCCCGCCTGCTGTACCCGGACCACATCCCAACCACCCCGCTGCAAAAGATGCTGCTGGCTGCGGGCGCGGCGGGAATGGCTCTCTACAACCCCTATCGCCACG
Seq C2 exon
ACATGGTTGCAGTTCTAGGGGAGACCACAGGATGCCACACCCTGAAATTCCTCAGGGACCAGATGAAGAAGGATCCAGAGGGTGCCCAGATTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026798-'0-11,'0-0,1-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.078 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
PF050198=Coq4=PU(13.5=66.7)
C2:
PF050198=Coq4=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTCCTTCTCATGCTCC
R:
GTGGTCTCCCCTAGAACTGCA
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types