BtaEX0010035 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038496 | CR2
Description
Bos taurus complement component (3d/Epstein Barr virus) receptor 2 (CR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001198991]
Coordinates
chr16:5285459-5286577:+
Coord C1 exon
chr16:5285459-5285866
Coord A exon
chr16:5286239-5286415
Coord C2 exon
chr16:5286490-5286577
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTGGGAAGTTTTCTCTCCAGGCT
3' ss Score
3.32
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATATCACCTGCCCACCACCTCCTGTTATCTACAATGGAGTACACACAGGCAGTTCTTCAGAAGATGTCCTGTATGGAACTACAGTCACTTACACATGTAACCCTGGGCCAGAAAGAGGAGTGAAGTACAACCTCATTGGGGAGAGCACAATTCGTTGTATAAGCAATGATCAAGAGACAGGCATCTGGAGTGGCCCTGCTCCTCTCTGTAAACTCTCCCTCCCTGCTGTTCAATGCTCGCATGTCCATGTTGCAAATGGATACAAGATATCTGGAAAGGAAGCTCCATATTTCTACAATGACAGTGTGATATTCAAGTGTGATGATGGATTTATTTTGAAGGGCAGCAGTCAGGTTCGTTGCAAAGCCAATAACACCTGGGATCCTGAAATACCAGTTTGTGAAAAAG
Seq A exon
GCTGTCAGCCACCCTCTGGGCTCCACCATGGTCGGCATACAGGTGGAAATAGGGTCCTCTTTGTCTCTGGGATGACTGTAGACTACACCTGTGACCTTGGTTACTTGCTTGTGGGAAACAGATCCATTCATTGTATGCCTTCAGGAAATTGGAGTCCGTCTGTCCCTCGGTGTGAAG
Seq C2 exon
AAGCACAATGCCAACCTTTGGAAGAAGATGTTCGAGAACCTCCAGTTGATTCACTCGTGGTACCAGCTAATATATCTTGCCAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038496_MULTIEX2-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=41.6)
A:
PF0008415=Sushi=WD(100=95.0)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACAGGCATCTGGAGTGG
R:
CCAAAGGTTGGCATTGTGCTT
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development