HsaEX0017115 @ hg38
Exon Skipping
Gene
ENSG00000117322 | CR2
Description
complement C3d receptor 2 [Source:HGNC Symbol;Acc:HGNC:2336]
Coordinates
chr1:207472772-207473885:+
Coord C1 exon
chr1:207472772-207473179
Coord A exon
chr1:207473545-207473721
Coord C2 exon
chr1:207473801-207473885
Length
177 bp
Sequences
Splice sites
3' ss Seq
TAGGGAGTTTTTCTCTTCAGGCT
3' ss Score
3.92
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAATCACCTGCCCACCACCCCCTGTTATCTACAATGGGGCACACACCGGGAGTTCCTTAGAAGATTTTCCATATGGAACCACGGTCACTTACACATGTAACCCTGGGCCAGAAAGAGGAGTGGAATTCAGCCTCATTGGAGAGAGCACCATCCGTTGTACAAGCAATGATCAAGAAAGAGGCACCTGGAGTGGCCCTGCTCCCCTGTGTAAACTTTCCCTCCTTGCTGTCCAGTGCTCACATGTCCATATTGCAAATGGATACAAGATATCTGGCAAGGAAGCCCCATATTTCTACAATGACACTGTGACATTCAAGTGTTATAGTGGATTTACTTTGAAGGGCAGTAGTCAGATTCGTTGCAAAGCTGATAACACCTGGGATCCTGAAATACCAGTTTGTGAAAAAG
Seq A exon
GCTGCCAGTCACCTCCTGGGCTCCACCATGGTCGTCATACAGGTGGAAATACGGTCTTCTTTGTCTCTGGGATGACTGTAGACTACACTTGTGACCCTGGCTATTTGCTTGTGGGAAACAAATCCATTCACTGTATGCCTTCAGGAAATTGGAGTCCTTCTGCCCCACGGTGTGAAG
Seq C2 exon
AAACATGCCAGCATGTGAGACAGAGTCTTCAAGAACTTCCAGCTGGTTCACGTGTGGAGCTAGTTAATACGTCCTGCCAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117322_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=40.9)
A:
PF0008415=Sushi=WD(100=95.0)
C2:
PF0008415=Sushi=PU(35.7=51.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCAGTGCTCACATGTCC
R:
CTAGCTCCACACGTGAACCAG
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development