BtaEX0010340 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017222 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr20:62300222-62312744:+
Coord C1 exon
chr20:62300222-62300398
Coord A exon
chr20:62311481-62311555
Coord C2 exon
chr20:62312594-62312744
Length
75 bp
Sequences
Splice sites
3' ss Seq
TAATCTCATATTTCATGCAGGGC
3' ss Score
5.83
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CAGTGGGATGGAGTAGGACCTCTTCCAGACTGTGCAGAACCACCAAAAGGGATCCAGATGCTGTGGCACCCATCCATAGTCAAACCCTACCTCACACTGCTCTCTGAGTGCTCAAATGCAGACACGCTGGAAGGGGCGGCGGGCGCCCTGCAGAACTTGGCTGCAGGGAGCTGGAAG
Seq A exon
GGCTGGGCTGAGGATGTGGCAGGCATGGCATATGCCCTACGTTCACTGCCAGAGGGGGCTCCCTGCCTGCCACAG
Seq C2 exon
TGGTCTGTATATATCCGAGCTGCTGTCCGGAAAGAGAAAGGCCTGCCCATCCTCGTGGAGCTGCTGCGGATCGACAATGACCGTGTGGTGTGCGCAGTGGCCACCGCGCTCCGGAACATGGCCTTGGACGTCAGGAATAAGGAGCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017222_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=71.2)
A:
NO
C2:
PF0051418=Arm=WD(100=78.4)
Main Inclusion Isoform:
ENSBTAT00000061068fB1961
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGCTCTCTGAGTGCTCA
R:
CACCACACGGTCATTGTCGAT
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development