RnoEX0025223 @ rn6
Exon Skipping
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:83988032-84002779:+
Coord C1 exon
chr2:83988032-83988205
Coord A exon
chr2:84001478-84001552
Coord C2 exon
chr2:84002629-84002779
Length
75 bp
Sequences
Splice sites
3' ss Seq
TAATCTCATATTTCATGCAGGGC
3' ss Score
5.83
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGGGATGGAGTAGGACCTCTTCCAGACTGTGCAGAACCACCAAAAGGGATCCAGATGCTGTGGCACCCATCCATAGTCAAACCCTACCTCACACTGCTCTCTGAGTGCTCAAACCCAGACACGCTGGAAGGGGCAGCGGGCGCCCTGCAGAACTTGGCTGCAGGGAGCTGGAAG
Seq A exon
GGCTGGGCTGAGGATGTGGCAGGCATGGCGTATGCCCTACGTTCACTGCCAGAGGGGGCTCCCTGCCTGCCACAG
Seq C2 exon
TGGTCCGTGTATATCCGAGCTGCTGTCCGGAAAGAGAAAGGCCTGCCCATTCTTGTGGAGCTCCTCCGAATAGACAATGACCGTGTAGTGTGTGCAGTGGCCACGGCACTCCGGAACATGGCCCTGGATGTCAGAAACAAGGAACTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=72.4)
A:
NO
C2:
PF0051418=Arm=WD(100=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAACCACCAAAAGGGA
R:
AGCAGCTCGGATATACACGGA
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]