BtaEX0011591 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28047044-28050917:+
Coord C1 exon
chr19:28047044-28047201
Coord A exon
chr19:28047830-28047917
Coord C2 exon
chr19:28050712-28050917
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTCAGTCTTTCTCACGACAGGTT
3' ss Score
7.94
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATGAGCAATGAGATCATTCGCCTGTGCTGCCATGCCATCTCCCTGGACCGCATCTTTGAGGGCTATGTCATCTCTAGCAAGGAGGACCTACAAGGCTGCATCTCTTGCTGTCACGCCTGGAAGGACCACTACCTTCGGGCTGTGCAGACACATACCCA
Seq A exon
GTTCTCCACCCGGGGCTGGATCCTAGACCAGACCAGCATATTTGCCCAGGTCGATGCCTTTGTACAACGCTGCAAGGACCTCATCGAG
Seq C2 exon
GTATGTGACTGTCAGTACCATTTTGCCCGCTGGGAAGATGGAAAGCAAGGTCCCCTCCCCTGCTTCTTCGGTGCCCAGGGGCCCCAGATAACACGGAACTTGCTGGAGATTGAGGACATCTTTCACAAAAACCTGCACGTGCTGCGAGCCGTCCGCGGGGGCATCCTGGATGTCAAGAACACCTCTTGGCATGAAGACTACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(24.5=100)
A:
PF083857=DHC_N1=PD(1.9=10.0)
C2:
PF083857=DHC_N1=PD(1.9=4.3),PF083857=DHC_N1=PU(18.8=89.9)
Main Inclusion Isoform:
ENSBTAT00000006277fB2196
Main Skipping Isoform:
ENSBTAT00000006277fB2195
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCCTGGACCGCATCTTT
R:
TTGCTTTCCATCTTCCCAGCG
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development