MmuEX6086635 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69329977-69331969:-
Coord C1 exon
chr11:69331778-69331969
Coord A exon
chr11:69330519-69330606
Coord C2 exon
chr11:69329977-69330182
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCATCTTCTCCCCCACACAGGTT
3' ss Score
10.56
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GATGGCTCTCGACAAGCTCAGTCCAACCTGACTTTCTTGTCCATCCTGAGGGAACCCTACCAGGAGTTGGCCTTCATGAAGCCTAAGGACATCTCTGAGAAGCTCCCGAAGCTGATCAGCCTCATCCGAATCATCTGGGTCAACTCCCCCCACTACAACACTCGGGAAAGGCTGACGGCGCTGTTCCGGAAG
Seq A exon
GTTCTCCAATCGGGGCTGGGTTCTGGACCAGACGAGCATATTTGCTCAAGTAGATGCCTTTGTGCAGCGCTGCAAAGACCTTATTGAG
Seq C2 exon
GTATGCGAATGTCAGTACCACTTTGCCCGTTGGGAAGACGGCAAGCAAGGTCCCCTTCCATGCTTCTTCGGTGCCCAGGGGCCACAGATCACACGAAACTTGCTAGAAATCGAGGACATCTTTCATAAAAATCTGCAAACGCTGCGAGCCGTGCGTGGCGGCATCCTGGATGTTAAGAACACCTCTTGGCACGAAGACTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'9-11,'9-9,11-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(7.6=18.5),PF083857=DHC_N1=PU(14.8=75.4)
A:
NA
C2:
PF083857=DHC_N1=PD(1.9=4.3),PF083857=DHC_N1=PU(18.8=89.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCATCCGAATCATCTGGG
R:
AGTTTCGTGTGATCTGTGGCC
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: