RnoEX6047999 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56120754-56121951:-
Coord C1 exon
chr10:56121794-56121951
Coord A exon
chr10:56121285-56121372
Coord C2 exon
chr10:56120754-56120959
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCATCTTCTCCTTCACACAGGTT
3' ss Score
10.17
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATGAGCAACGAGATTATCCGTCTATGCTGTCACTCCGTCTCTTTGGACCGAATCTTTGAGGGCTATGTCTCTTCCAGCAAGGAAGACCTGCAAGGCTGCATTTCCTGTTGCCACGCCTGGAAAGAGCACTACCTGCGCGCCGTACAGATGCATACCCA
Seq A exon
GTTCTCCAACCGGGGCTGGGTTCTAGACCAGACGAGCATATTTGCTCAAGTAGACGCCTTTGTGCAGCGCTGCAAAGATCTTATTGAG
Seq C2 exon
GTATGCGACTGCCAGTACCACTTTGCCCGTTGGTTAGACGGCACACAGGGTCCCCTTCCATGCTTCTTCGGTGCCCAGGGGCCACAGATCACACGGAACTTGCTAGAAATTGAGGACATCTTTCATAAAAATCTGCAAACGCTGCGAGCTGTGCGTGGGGGCATCCTAGATGTTAAGAACACCTCTTGGCACGAGGACTACAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.1=100)
A:
PF083857=DHC_N1=FE(5.1=100)
C2:
PF083857=DHC_N1=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCACTCCGTCTCTTTGG
R:
CTAACCAACGGGCAAAGTGGT
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]