BtaEX0011615 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84841179-84858795:-
Coord C1 exon
chr2:84858610-84858795
Coord A exon
chr2:84848809-84848972
Coord C2 exon
chr2:84841179-84841333
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGTATGTCTCAAAGAAC
3' ss Score
5.36
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
GTTGACCTGTGCAGCAAAAAGCTAGAACGAGCTGAACAATTGATCGGAGGCCTTGGGGGTGAGAAAACACGATGGAGCCAGACAGCTCTGGAGTTGGGGCAGCTGTACATCAACCTGACGGGGGACATCCTTGTTTCTTCAGGGGTCGTGGCTTACCTTGGAGCCTTCACATCTAACTATCGACAG
Seq A exon
AACCAAATCAAGGAGTGGACAAATTTGTGCAAAAGAAGAGATATCCCCTGCTCTGAAGATTATTCCCTTATGAATATCCTGGGAGAAGCAGTGACAATTCGAGCCTGGAATATTGCTGGATTACCTTCTGACTCATTTTCTATTGATAATGGGATTATCATAAT
Seq C2 exon
GAATGCAAGAAGGTGGCCTCTGATGATAGATCCTCAAGGTCAGGCTAATAAATGGATCAAGAACATGGAAAAAACCAATAGTCTTCACCTAATTAAATTAAGTGACCCTGACTATGTCAGAACTTTGGAAAACTGCATCCAATTTGGTACCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'48-54,'48-53,50-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.4=100)
A:
PF127772=MT=PD(2.3=14.5),PF127812=AAA_9=PU(12.6=52.7)
C2:
PF127812=AAA_9=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGGGCAGCTGTACATC
R:
ACCAAATTGGATGCAGTTTTCCA
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development