GgaEX6041828 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9205661-9209329:-
Coord C1 exon
chr7:9209144-9209329
Coord A exon
chr7:9208339-9208502
Coord C2 exon
chr7:9205661-9205815
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCTTTTCTCATCTAGATG
3' ss Score
10.32
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTTGACTTATGCTGCAAAAAAATGCAGCGAGCAGAGCAATTGATTGGAGGCCTTGGTGGTGAGAAAACTCGGTGGAATGAGACCGCTTTGGAGCTGGCAAGGCAGTACACCAATTTGACTGGAGATATACTTATTTCATCAGGAATTGTAGCTTACCTAGGAGCATTTACATCCAGCTACAGAAAA
Seq A exon
ATGCAAACTAAAGAGTGGACATTACTATGCAAAGCAAAAAACATTCCTTGTTCTGATGATTTTTCCTTAACAACTACCTTGGGAGAGCCAGTGGAAATCAGAGCTTGGAATATTGCTGGGTTACCCTCTGACATGTTTTCTGTTGATAATGGCATCATTATCTC
Seq C2 exon
TAATGCAAGAAGATGGCCTCTTATGATAGATCCTCAGGGTCAAGCAAATAAATGGATAAAGAATATGGAAAAAGTCAATAACCTGCATGTAATCAAGCTCAGCGACCCTCAGTTTGTTACGACACTGGAAAATTGCATTCAGTTTGGCAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'54-61,'54-59,55-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.4=100)
A:
PF127772=MT=PD(2.3=14.5),PF127812=AAA_9=PU(12.6=52.7)
C2:
PF127812=AAA_9=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGAGAAAACTCGGTGG
R:
CGTAACAAACTGAGGGTCGCT
Band lengths:
253-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]