BtaEX0011989 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34509864-34511339:+
Coord C1 exon
chr2:34509864-34509955
Coord A exon
chr2:34510070-34510170
Coord C2 exon
chr2:34511259-34511339
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGTTGGACTCTTTCTGCAGCAT
3' ss Score
7.69
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
ATCATGAATATCTCTACAAACAAGAAAATAATATCTTGCTATTCAATGCTGAATATGGAAACAGCTCCATTTTCTTGGAGAACAGTACATTT
Seq A exon
CATATGGTGCGGTGGATCTTTCTCTTCTTGGAATGCTCCCTGCCTTGGTTACTTTTTAGTCTCCTTTGACGATTCCTCCTCCTCTGCCCATTCTCTTACGT
Seq C2 exon
GATGAATTTGGACATTCTATAAATGATTATTCAGTTTCACCAGATAGACAATATATTCTCTTCGAATACAACTATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0093016=DPPIV_N=PU(8.5=51.9)
Main Inclusion Isoform:
ENSBTAT00000056886fB2260
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAATGCTGAATATGGAAACAGCT
R:
CTTCACATAGTTGTATTCGAAGAGAA
Band lengths:
132-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development